glowing bacteria in 5 steps (DIY bio / kitchen biology)

shiny

Or, harvest your own glowing bacteria for <$10 using everyday kitchen ingredients / equipment. This’ll be a post-in-progress. But the gist is this:

  1. Buy a small squid (or some shrimp), as fresh and untouched (not cleaned) as possible.
  2. Put it in a covered container (e.g. a gatorade bottle) with some salt water (leave some surfaces exposed! the bacteria need oxygen apparently) for 24 hours in the dark @ room temperature. (aluminum foil, cardboard, and closets are all useful).
    Covered is key as otherwise it STINKS. Yay rotting seafood.
  3. Check for luminescence after 24 hours.
    (I suggest a camera with adjusted exposure settings, since I missed it first time around when checking by naked eye. After realizing it was there, it was definitely visible, even with low-light coming in from the propped open closet door).
  4. If successful (there are glowing bits), sterilize some petri-dish substitute, make some jello with some other nutrients (agar substitute), pick some colonies (sterile toothpick), and plate them.
  5. Profit.  e.g. If 4. is successful (lots of glowing bits), try putting it in a FLASK
    bwahaha evil mad scientist
    Ehem. Or make art. Wikipedia: BioArt.

Sparse picture-set here:

Acknowledgement~
This idea sparked from a post by Macowell (of DIYbio-boston):
http://www.bioluminopedia.info/apps/blog/show/3050879-culturing-bioluminescent-microbes
with pictures on Flickr:
http://www.flickr.com/photos/macowell/sets/72157623216167176/

However, I found the post sparse on some crucial details and the author unresponsive to email, and the DIYbio-boston group seems to be older-than-undergraduate people. Ah well. Anyway, I’m carrying through, and have run 3 variations so far, one of which produced glowing bacteria! yay.

The variations:

  1. Squid from Chinatown. Stuck in pot, completely submerged in overly salty water, for a week (annoyed hallmates with smell)
  2. With Judy, knowledgeable bio and hallmate, bought cleaned squid (kalamari?) from New Deal Fish Market (which is actually a small corner store). See picture @ top of page for result.
    Successful, but we waited another 24 hours to make plates due to hosage, and the bacteria died before we could plate them
  3. Fresh farm-raised squid, at home in ATL — incubated outside — did not see anything glowing, but I was a bit negligent on checking it.
Links I found useful:
For the DIYbio broth formulation, see:

Cool pictures:
http://www.biology.pl/bakterie_sw/bac_hp_en.html

See how strong the light can be:
http://www.huntercole.org/artgallery/livinglightphotographyvideo/index.html

Oh, and email with any questions, I’m on email all the time and always looking for excuses to punt 🙂 If I don’t respond, email me again! It may have gotten spam-filtered or lost in the sea of MIT email.
p.s. it’s bioluminescence, not fluorescence, so you don’t need UV light or any light for the glowing to occur.
p.p.s. for those wary of having to constantly refresh the medium / feed the bacteria, consider how often you have to plug in electronic devices and feed them electricity 🙂
Wait, that would be cool, a common low-cost fuel source for bacterial devices… hmm… Oh yes, power electronics is awesome and the electricity grid is amazing! Stopping to think about the engineering behind it boggles my mind.

2.007 (aka earn credit for building a robot) – Hexalinkagepod

d’aww, isn’t it cute?

I finished (for small degrees of finish) my simple linkage hexapod robot for 2.007, aka Design and Manufacturing I. This is MIT’s fabled class, from which sprung forth the FIRST Robotics Competition, which is probably the reason I applied to MIT in the first place (go Team 1261!). Building this turned out to be more complicated than I ever imagined. It doesn’t work well, but it’s super cute 😀 Yay for the first robot I ever built from scratch!



Fairly extensive photos from the build process here on picasaweb:

2.007
https://picasaweb.google.com/nancy.ouyang/2007
 (most of timestamps are 2 to 3 days off, and 12 hours off. camera settings fail)

I also wrote some Arduino documentation for my fellow 2.007 students. See
https://sites.google.com/site/2007arduino/getting-started

Edit 4/3/11: A lot more documentation went up recently, so I wanted to note that the only I wrote above page. The rest is the wonderful work of the 2.007 staff.

New Projects Blog

orange narwhals are awesome! I’ll post my CSS modifications to the Blogger template in a bit, and would like to attribute the orange narwhals I used for my background to the Ubuntu Natty Narwhal backgrounds. I’m in the process of moving worthy posts over from nouyang.blogspot.com, which I’m converting into a documentation blog.

projects blog (nouyang)